Dynamic Graph Rewrite of Coupled Oscillators as Autocatalytic Cycles in the Kauffman-Guerin Particle Apothecary Model

Introduction

This research explores a dynamic graph rewrite model of coupled oscillators, representing autocatalytic cycles of frequency and phase. This is inspired by the Kauffman-Guerin autocatalytic particle transformations in the Particle Apothecary Model defined in Kauffman, Guerin (2024) Did the Universe Construct Itself?, where spacetime graphs grow autocatalytically.

Background and Motivation

In the Kauffman-Guerin model, spacetime emerges from autocatalytic transformations, suggesting a self-constructing universe. Coupled oscillators are known to exhibit complex behaviors such as synchronization and resonance, which can be mapped to autocatalytic cycles in frequency and phase.

By leveraging spectral graph theory, this project aims to analyze resonances and modes within these dynamic graphs, offering insights into the emergent properties of spacetime growth. The research bridges concepts from:

Research Objectives

Mathematical Formulation

1. Dynamic Graph Model of Coupled Oscillators

The dynamic graph rewrite model is represented as a time-varying graph \(G(t) = (V, E(t))\) where each node \(i\) has the following state variables:

• Frequency \(\omega_i\)

• Amplitude \(A_i\)

• Phase \(\phi_i\)

Edge Dynamics:

Coupling between nodes \(i\) and \(j\) can be represented as:

\[ \frac{d^2x_i}{dt^2} + \gamma_i\frac{dx_i}{dt} + \omega_i^2x_i = \sum_j K_{ij}(x_j - x_i) \]

where:

Energy of the System:

\[ E = \sum_{i=1}^{n} \left[ \frac{1}{2}m_i\left(\frac{dx_i}{dt}\right)^2 + \frac{1}{2}k_ix_i^2 \right] + \sum_{i,j} \frac{1}{2}K_{ij}(x_j - x_i)^2 \]

Spectral Graph Theory and Laplacian Analysis

Laplacian Matrix Formulation

The Laplacian matrix of a graph is defined as:

\[ L = D - A \]

where:

  • \(D\) is the degree matrix
  • \(A\) is the adjacency matrix

For weighted graphs, the weighted Laplacian is:

\[ L_{ij} = \begin{cases} \sum_{k \neq i} w_{ik} & \text{if } i = j \\ -w_{ij} & \text{if } i \neq j \text{ and } (i,j) \in E \\ 0 & \text{otherwise} \end{cases} \]

Eigenvalue and Eigenvector Analysis

  • Eigenvalues \(\lambda_k\) correspond to normal modes of oscillation
  • Small eigenvalues indicate global, systemic modes
  • Larger eigenvalues correspond to localized modes
  • The eigenvector \(v_k\) corresponding to eigenvalue \(\lambda_k\) represents the spatial distribution of the mode

The eigenvalue equation is:

\[ L v_k = \lambda_k v_k \]

Resonance Detection and Mode Analysis

Natural Frequencies

Resonance occurs when node frequencies match or harmonically relate to Laplacian eigenfrequencies: \[ \omega_i \approx \sqrt{\lambda_k} \]

Eigenvalue Spectrum Analysis

Dynamic Graph Rewrite and Harmonic Analysis

Time-varying Laplacian

The time-dependent Laplacian \(L(t) = D(t) - A(t)\) captures dynamic coupling changes in the network.

Fourier Analysis

Applying Fourier transforms to node oscillations extracts dominant frequencies and phases: \[ \hat{x}_i(\omega) = \int_{-\infty}^{\infty} x_i(t) e^{-i\omega t} dt \]

Autocatalytic Cycles

Autocatalytic cycles emerge when the oscillation of one node catalyzes changes in connected nodes, which in turn affect the original node. These cycles can be detected through:

Relation to Kauffman-Guerin DUCI Model

The Kauffman-Guerin DUCI (Did the Universe Construct Itself?) model proposes that spacetime emerges from autocatalytic particle transformations. Our research extends this concept by:

Methodology and Implementation

  1. Construct dynamic graphs where nodes are oscillators with states of frequency, amplitude, and phase.
  2. Define autocatalytic cycles influencing node state updates via dynamic graph rewrites.
  3. Utilize spectral graph theory, particularly Laplacian eigenvalues and eigenvectors, to analyze resonances and modes.
  4. Simulate the system using agentscript.org, visualizing resonance patterns and spectral evolution.

Simulation Framework

\[ \begin{align} x_i(t+\Delta t) &= x_i(t) + v_i(t)\Delta t \\ v_i(t+\Delta t) &= v_i(t) + \left[-\gamma_i v_i(t) - \omega_i^2 x_i(t) + \sum_j K_{ij}(x_j(t) - x_i(t))\right]\Delta t \end{align} \]

The graph structure itself evolves according to node state-dependent rules:

\[ K_{ij}(t+\Delta t) = f(K_{ij}(t), \omega_i, \omega_j, \phi_i, \phi_j, A_i, A_j) \]

Outcomes and Significance

This research is focused on::

The findings contributes to fundamental understanding in complex systems theory, network science, and theoretical physics, particularly relating to emergent phenomena and self-organization.